ERX371679
Illumina HiSeq 2000 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Breast
Cell type
Mammary epithelial cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
Mammary Epithelial
ArrayExpress-Genotype
Wildtype
ArrayExpress-GrowthCondition
As described on ATCC
ArrayExpress-Immunoprecipitate
BRD4
ArrayExpress-OrganismPart
Mammary gland
ArrayExpress-Phenotype
Cancer
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA first public
2014-01-07
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2189994
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2014-01-07T10:46:39Z
INSDC last update
2018-03-08T16:44:35Z
INSDC status
public
Submitter Id
WKSE_2b-sc-2013-09-23T13:08:04Z-1705802
common name
human
sample description
MDA157 cells BRD4 pulldown
sample name
WKSE_2b-sc-2013-09-23T13:08:04Z-1705802

Sequenced DNA Library

library_name
8215912
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7197953
Reads aligned (%)
79.5
Duplicates removed (%)
79.1
Number of peaks
277 (qval < 1E-05)

hg19

Number of total reads
7197953
Reads aligned (%)
99.6
Duplicates removed (%)
80.9
Number of peaks
95 (qval < 1E-05)

Base call quality data from DBCLS SRA